A wrapper for `msigdbr::msigdbr` to fetch gene sets and format
them as a named list (GMT format).
Usage
getMsigdbGmt(species = "Homo sapiens", collection = "H", verbose = TRUE)
Arguments
- species
The scientific name for the species (e.g., "Homo sapiens").
- collection
The MSigDB collection code (e.g., "H" for hallmark).
- verbose
A logical value indicating whether to print progress messages.
Value
A named list where names are gene set names and values are character
vectors of gene symbols.