Prune Network Edges Before Cytoscape Export — pruneNetwork • ComplexMap

Reduces the number of edges in a `ComplexMap` object to prevent browser overload during interactive exploration.

Usage

pruneNetwork(
  cmap,
  method = "top_k",
  k = 5,
  weight_quantile = 0.75,
  verbose = TRUE
)

Arguments

cmap: A `ComplexMap` object.
method: Pruning method: `"top_k"` (keep top-k edges per node) or `"quantile"` (keep edges above a weight quantile).
k: Integer. Number of top edges to retain per node when `method = "top_k"`.
weight_quantile: Numeric (0-1). Quantile threshold when `method = "quantile"`. Defaults to `0.75`.
verbose: Logical.

Value

A modified `ComplexMap` object with pruned edges.